multivariate functional data
Bayesian Nonparametric Detection of Anomalies in Multivariate Functional Data
Krasnov, Daniel, Stephens, David
Anomalies in functional data arise from rare or distinct processes that deviate from the dominant data-generating mechanism. Detecting such departures is essential in applications where they may correspond to errors, structural changes, or other behavior of interest. This work introduces a Bayesian nonparametric approach for anomaly detection in multivariate functional data. We model functional data as an infinite mixture of multi-output Gaussian processes, with a finite and automatically determined number of mixture components obtained through slice sampling. Mean functions are represented using a wavelet basis and regularized through Besov priors to obtain a smooth and sparse representation of the data. Cross-functional dependence is captured using the intrinsic coregionalization model and we solve covariance kernel selection by introducing a Carlin-Chib product space step in the Markov Chain Monte Carlo algorithm. Within this model, anomalous observations are assigned to small mixture components without requiring prior specification of the number or nature of anomalies. We consider a semi-supervised setting, in which labels are available for 15% of the normal observations and a large class imbalance is present. The utility of our model is demonstrated on both univariate and multivariate functional data.
Directed Cyclic Graph for Causal Discovery from Multivariate Functional Data
Discovering causal relationship using multivariate functional data has received a significant amount of attention very recently. In this article, we introduce a functional linear structural equation model for causal structure learning when the underlying graph involving the multivariate functions may have cycles. To enhance interpretability, our model involves a low-dimensional causal embedded space such that all the relevant causal information in the multivariate functional data is preserved in this lower-dimensional subspace. We prove that the proposed model is causally identifiable under standard assumptions that are often made in the causal discovery literature. To carry out inference of our model, we develop a fully Bayesian framework with suitable prior specifications and uncertainty quantification through posterior summaries. We illustrate the superior performance of our method over existing methods in terms of causal graph estimation through extensive simulation studies. We also demonstrate the proposed method using a brain EEG dataset.
Directed Cyclic Graph for Causal Discovery from Multivariate Functional Data
Discovering causal relationship using multivariate functional data has received a significant amount of attention very recently. In this article, we introduce a functional linear structural equation model for causal structure learning when the underlying graph involving the multivariate functions may have cycles.
Directed Cyclic Graph for Causal Discovery from Multivariate Functional Data
Discovering causal relationship using multivariate functional data has received a significant amount of attention very recently. In this article, we introduce a functional linear structural equation model for causal structure learning when the underlying graph involving the multivariate functions may have cycles. To enhance interpretability, our model involves a low-dimensional causal embedded space such that all the relevant causal information in the multivariate functional data is preserved in this lower-dimensional subspace. We prove that the proposed model is causally identifiable under standard assumptions that are often made in the causal discovery literature. To carry out inference of our model, we develop a fully Bayesian framework with suitable prior specifications and uncertainty quantification through posterior summaries.
FDApy: a Python package for functional data
We introduce FDApy, an open-source Python package for the analysis of functional data. The package provides tools for the representation of (multivariate) functional data defined on different dimensional domains and for functional data that is irregularly sampled. Additionally, dimension reduction techniques are implemented for multivariate and/or multidimensional functional data that are regularly or irregularly sampled. A toolbox for generating functional datasets is also provided. The documentation includes installation and usage instructions, examples on simulated and real datasets and a complete description of the API. FDApy is released under the MIT license. The code and documentation are available at https://github.com/StevenGolovkine/FDApy.
On the estimation of the number of components in multivariate functional principal component analysis
Golovkine, Steven, Gunning, Edward, Simpkin, Andrew J., Bargary, Norma
Happ and Greven [2018] develop innovative theory and methodology for the dimension reduction of multivariate functional data on possibly different dimensional domains (e.g., curves and images), which extends existing methods that were limited to either univariate functional data or multivariate functional data on a common one-dimensional domain. Recent research has shown a growing presence of data defined on different dimensional domains in diverse fields such as biomechanics, e.g., Warmenhoven et al. [2019] and neuroscience, e.g., Song and Kim [2022], so we expect the work to have significant practical impact. We aim to provide commentary on the estimation of the number of principal components utilising the methodology devised in Happ and Greven [2018]. To achieve this, we conduct an extensive simulation study and subsequently propose practical guidelines for practitioners to adeptly choose the appropriate number of components for multivariate functional datasets. For ease of presentation, we use the same notation as in Happ and Greven [2018].
Directed Cyclic Graph for Causal Discovery from Multivariate Functional Data
Roy, Saptarshi, Wong, Raymond K. W., Ni, Yang
Discovering causal relationship using multivariate functional data has received a significant amount of attention very recently. In this article, we introduce a functional linear structural equation model for causal structure learning when the underlying graph involving the multivariate functions may have cycles. To enhance interpretability, our model involves a low-dimensional causal embedded space such that all the relevant causal information in the multivariate functional data is preserved in this lower-dimensional subspace. We prove that the proposed model is causally identifiable under standard assumptions that are often made in the causal discovery literature. To carry out inference of our model, we develop a fully Bayesian framework with suitable prior specifications and uncertainty quantification through posterior summaries. We illustrate the superior performance of our method over existing methods in terms of causal graph estimation through extensive simulation studies. We also demonstrate the proposed method using a brain EEG dataset.